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src/c/o/cogent-1.5.3/cogent/evolve/substitution_calculation.py   cogent(Download)
        NonParamDefn, CallDefn, SelectForDimension, \
        GammaDefn, WeightedPartitionDefn, CalcDefn
from cogent.maths.matrix_exponentiation import PadeExponentiator, \
        FastExponentiator, CheckedExponentiator, LinAlgError
 

src/p/y/pycogent-HEAD/cogent/evolve/substitution_calculation.py   pycogent(Download)
        NonParamDefn, CallDefn, SelectForDimension, \
        GammaDefn, WeightedPartitionDefn, CalcDefn
from cogent.maths.matrix_exponentiation import PadeExponentiator, \
        FastExponentiator, CheckedExponentiator, LinAlgError
 

src/c/o/cogent-1.5.3/cogent/seqsim/usage.py   cogent(Download)
from cogent.maths.matrix_logarithm import logm
from cogent.maths.stats.util import FreqsI
from cogent.maths.matrix_exponentiation import FastExponentiator as expm
from numpy import zeros, array, max, diag, log, nonzero, product, cumsum, \
                  searchsorted, exp, diagonal, choose, less, repeat, average,\

src/c/o/cogent-1.5.3/cogent/maths/svd.py   cogent(Download)
from __future__ import division
from cogent.maths.stats.test import std # numpy.std is biased
from cogent.maths.matrix_exponentiation import FastExponentiator as expm
from cogent.maths.matrix_logarithm import logm
#note: corrcoef and cov assume rows are observations, cols are variables

src/c/o/cogent-1.5.3/cogent/evolve/solved_models.py   cogent(Download)
from cogent.evolve.substitution_model import Nucleotide, CalcDefn
from cogent.evolve.predicate import MotifChange
from cogent.maths.matrix_exponentiation import FastExponentiator
import numpy
 

src/p/y/pycogent-HEAD/cogent/seqsim/usage.py   pycogent(Download)
from cogent.maths.matrix_logarithm import logm
from cogent.maths.stats.util import FreqsI
from cogent.maths.matrix_exponentiation import FastExponentiator as expm
from numpy import zeros, array, max, diag, log, nonzero, product, cumsum, \
                  searchsorted, exp, diagonal, choose, less, repeat, average,\

src/p/y/pycogent-HEAD/cogent/maths/svd.py   pycogent(Download)
from __future__ import division
from cogent.maths.stats.test import std # numpy.std is biased
from cogent.maths.matrix_exponentiation import FastExponentiator as expm
from cogent.maths.matrix_logarithm import logm
#note: corrcoef and cov assume rows are observations, cols are variables

src/p/y/pycogent-HEAD/cogent/evolve/solved_models.py   pycogent(Download)
from cogent.evolve.substitution_model import Nucleotide, CalcDefn
from cogent.evolve.predicate import MotifChange
from cogent.maths.matrix_exponentiation import FastExponentiator
import numpy
 

src/p/y/pycogent-HEAD/tests/test_seqsim/test_usage.py   pycogent(Download)
                  array, sum
from cogent.maths.matrix_logarithm import logm
from cogent.maths.matrix_exponentiation import FastExponentiator as expm
 
#need to find test directory to get access to the tests of the Freqs interface

src/c/o/cogent-1.5.3/tests/test_seqsim/test_usage.py   cogent(Download)
                  array, sum
from cogent.maths.matrix_logarithm import logm
from cogent.maths.matrix_exponentiation import FastExponentiator as expm
 
#need to find test directory to get access to the tests of the Freqs interface