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src/c/o/cogent-1.5.3/cogent/maths/stats/alpha_diversity.py   cogent(Download)
#!/usr/bin/env python
from __future__ import division
from cogent.maths.stats.special import lgam
from cogent.maths.optimisers import minimise
from math import ceil, e
        return (alpha * log(1 + (n/alpha)) - s)**2
 
    alpha = minimise(f, 1.0, bounds, local=True)
 
    if f(alpha) > 1.0:

src/p/y/pycogent-HEAD/cogent/maths/stats/alpha_diversity.py   pycogent(Download)
#!/usr/bin/env python
from __future__ import division
from cogent.maths.stats.special import lgam
from cogent.maths.optimisers import minimise
from math import ceil, e
        return (alpha * log(1 + (n/alpha)) - s)**2
 
    alpha = minimise(f, 1.0, bounds, local=True)
 
    if f(alpha) > 1.0:

src/q/i/qiime-1.8.0/qiime/pycogent_backports/alpha_diversity.py   qiime(Download)
#!/usr/bin/env python
from __future__ import division
from cogent.maths.stats.special import lgam
from cogent.maths.optimisers import minimise
from math import ceil, e
        return (alpha * log(1 + (n/alpha)) - s)**2
 
    alpha = minimise(f, 1.0, bounds, local=True)
 
    if f(alpha) > 1.0: