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src/c/o/cogent-1.5.3/tests/test_maths/test_stats/test_alpha_diversity.py   cogent(Download)
from math import e
from cogent.util.unit_test import TestCase, main
from cogent.maths.stats.alpha_diversity import expand_counts, counts, observed_species, singles, \
    doubles, osd, margalef, menhinick, dominance, simpson, \
    simpson_reciprocal, reciprocal_simpson,\
    def test_counts(self):
        """counts should return correct array"""
        c = array([5,0,1,1,5,5])
        obs = counts(c)
        exp = array([1,2,0,0,0,3])
        self.assertEqual(obs, exp)
        d = array([2,2,1,0])
        obs = counts(d, obs)

src/p/y/pycogent-HEAD/tests/test_maths/test_stats/test_alpha_diversity.py   pycogent(Download)
from math import e
from cogent.util.unit_test import TestCase, main
from cogent.maths.stats.alpha_diversity import expand_counts, counts, observed_species, singles, \
    doubles, osd, margalef, menhinick, dominance, simpson, \
    simpson_reciprocal, reciprocal_simpson,\
    def test_counts(self):
        """counts should return correct array"""
        c = array([5,0,1,1,5,5])
        obs = counts(c)
        exp = array([1,2,0,0,0,3])
        self.assertEqual(obs, exp)
        d = array([2,2,1,0])
        obs = counts(d, obs)