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src/c/o/cogent-1.5.3/cogent/motif/k_word.py   cogent(Download)
from cogent.core.bitvector import PackedBases
from cogent.maths.stats.test import combinations, multiple_comparisons
from cogent.maths.stats.distribution import poisson_high
from numpy import array, fromstring
 
 
        #Strict P value from poisson_high
        strict_p_value = poisson_high(len(module)-1,strict_mean)
        #Correct P value for multiple comparisons
        strict_p_corrected = \
            (aln_len + num_seqs*(1-module_len))*(module_p)
        #Loose P value from poisson_high
        loose_p_value = poisson_high(len(module)-1,loose_mean)
        #Correct P value for multiple comparisons
        loose_p_corrected = \

src/p/y/pycogent-HEAD/cogent/motif/k_word.py   pycogent(Download)
from cogent.core.bitvector import PackedBases
from cogent.maths.stats.test import combinations, multiple_comparisons
from cogent.maths.stats.distribution import poisson_high
from numpy import array, fromstring
 
 
        #Strict P value from poisson_high
        strict_p_value = poisson_high(len(module)-1,strict_mean)
        #Correct P value for multiple comparisons
        strict_p_corrected = \
            (aln_len + num_seqs*(1-module_len))*(module_p)
        #Loose P value from poisson_high
        loose_p_value = poisson_high(len(module)-1,loose_mean)
        #Correct P value for multiple comparisons
        loose_p_corrected = \

src/c/o/cogent-1.5.3/tests/test_maths/test_stats/test_distribution.py   cogent(Download)
 
from cogent.util.unit_test import TestCase, main
from cogent.maths.stats.distribution import z_low, z_high, zprob, chi_low, \
    chi_high, t_low, t_high, tprob, poisson_high, poisson_low, poisson_exact, \
    binomial_high, binomial_low, binomial_exact, f_low, f_high, fprob, \

src/p/y/pycogent-HEAD/tests/test_maths/test_stats/test_distribution.py   pycogent(Download)
 
from cogent.util.unit_test import TestCase, main
from cogent.maths.stats.distribution import z_low, z_high, zprob, chi_low, \
    chi_high, t_low, t_high, tprob, poisson_high, poisson_low, poisson_exact, \
    binomial_high, binomial_low, binomial_exact, f_low, f_high, fprob, \