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src/c/o/cogent-1.5.3/cogent/evolve/parameter_controller.py   cogent(Download)
from cogent.evolve.likelihood_function import LikelihoodFunction as _LF
from cogent.recalculation.scope import _indexed
from cogent.maths.stats.information_criteria import aic, bic
 
 
        lnL = self.getLogLikelihood()
        nfp = self.getNumFreeParams()
        return bic(lnL, nfp, sequence_length)
 
class AlignmentLikelihoodFunction(_LikelihoodParameterController):

src/p/y/pycogent-HEAD/cogent/evolve/parameter_controller.py   pycogent(Download)
from cogent.evolve.likelihood_function import LikelihoodFunction as _LF
from cogent.recalculation.scope import _indexed
from cogent.maths.stats.information_criteria import aic, bic
 
 
        lnL = self.getLogLikelihood()
        nfp = self.getNumFreeParams()
        return bic(lnL, nfp, sequence_length)
 
class AlignmentLikelihoodFunction(_LikelihoodParameterController):

src/p/y/pycogent-HEAD/tests/test_maths/test_stats/test_information_criteria.py   pycogent(Download)
#!/usr/bin/env python
from cogent.util.unit_test import TestCase, main
from cogent.maths.stats.information_criteria import aic, bic
 
 

src/p/y/pycogent-HEAD/tests/test_evolve/test_likelihood_function.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.maths.matrix_exponentiation import PadeExponentiator as expm
from cogent.maths.stats.information_criteria import aic, bic
from cogent.evolve.models import JTT92
 

src/c/o/cogent-1.5.3/tests/test_maths/test_stats/test_information_criteria.py   cogent(Download)
#!/usr/bin/env python
from cogent.util.unit_test import TestCase, main
from cogent.maths.stats.information_criteria import aic, bic
 
 

src/c/o/cogent-1.5.3/tests/test_evolve/test_likelihood_function.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.maths.matrix_exponentiation import PadeExponentiator as expm
from cogent.maths.stats.information_criteria import aic, bic
from cogent.evolve.models import JTT92