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src/c/o/cogent-1.5.3/cogent/motif/k_word.py   cogent(Download)
    MotifFinder, Location, ModuleInstance, MotifResults
from cogent.core.bitvector import PackedBases
from cogent.maths.stats.test import combinations, multiple_comparisons
from cogent.maths.stats.distribution import poisson_high
from numpy import array, fromstring
        #Correct P value for multiple comparisons
        strict_p_corrected = \
            multiple_comparisons(strict_p_value,alphabet_len**module_len)
 
        return strict_p_corrected
        #Correct P value for multiple comparisons
        loose_p_corrected = \
            multiple_comparisons(loose_p_value,alphabet_len**module_len)
 
        return loose_p_corrected

src/p/y/pycogent-HEAD/cogent/motif/k_word.py   pycogent(Download)
    MotifFinder, Location, ModuleInstance, MotifResults
from cogent.core.bitvector import PackedBases
from cogent.maths.stats.test import combinations, multiple_comparisons
from cogent.maths.stats.distribution import poisson_high
from numpy import array, fromstring
        #Correct P value for multiple comparisons
        strict_p_corrected = \
            multiple_comparisons(strict_p_value,alphabet_len**module_len)
 
        return strict_p_corrected
        #Correct P value for multiple comparisons
        loose_p_corrected = \
            multiple_comparisons(loose_p_value,alphabet_len**module_len)
 
        return loose_p_corrected