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src/q/i/qiime-1.8.0/qiime/beta_metrics.py   qiime(Download)
dist_weighted_normalized_unifrac = make_unifrac_metric('correct',
    fast_tree.weighted_unifrac, True)
dist_unifrac_g = make_unifrac_metric(False, fast_tree.G, False)
dist_unifrac_g_full_tree = make_unifrac_metric(False, 
    fast_tree.unnormalized_G, False)
one_sample_weighted_normalized_unifrac = make_unifrac_row_metric('correct',
    fast_tree.weighted_unifrac, True)
one_sample_unifrac_g = make_unifrac_row_metric(False, fast_tree.G, False)
one_sample_unifrac_g_full_tree = make_unifrac_row_metric(False, 
    fast_tree.unnormalized_G, False)

src/q/i/qiime-HEAD/qiime/beta_metrics.py   qiime(Download)
dist_weighted_normalized_unifrac = make_unifrac_metric('correct',
                                                       fast_tree.weighted_unifrac, True)
dist_unifrac_g = make_unifrac_metric(False, fast_tree.G, False)
dist_unifrac_g_full_tree = make_unifrac_metric(False,
                                               fast_tree.unnormalized_G, False)
one_sample_weighted_normalized_unifrac = make_unifrac_row_metric('correct',
                                                                 fast_tree.weighted_unifrac, True)
one_sample_unifrac_g = make_unifrac_row_metric(False, fast_tree.G, False)
one_sample_unifrac_g_full_tree = make_unifrac_row_metric(False,
                                                         fast_tree.unnormalized_G, False)

src/c/o/cogent-1.5.3/tests/test_maths/test_unifrac/test_fast_tree.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.parse.tree import DndParser
from cogent.maths.unifrac.fast_tree import (count_envs, sum_env_dict, 
    index_envs, get_branch_lengths, index_tree, bind_to_array, 
    bind_to_parent_array, _is_parent_empty, delete_empty_parents,

src/p/y/pycogent-HEAD/tests/test_maths/test_unifrac/test_fast_tree.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.parse.tree import DndParser
from cogent.maths.unifrac.fast_tree import (count_envs, sum_env_dict, 
    index_envs, get_branch_lengths, index_tree, bind_to_array, 
    bind_to_parent_array, _is_parent_empty, delete_empty_parents,