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src/c/o/cogent-1.5.3/tests/test_maths/test_unifrac/test_fast_tree.py   cogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.parse.tree import DndParser
from cogent.maths.unifrac.fast_tree import (count_envs, sum_env_dict, 
    index_envs, get_branch_lengths, index_tree, bind_to_array, 
    bind_to_parent_array, _is_parent_empty, delete_empty_parents,
    def test_prep_items_for_jackknife(self):
        """prep_items_for_jackknife should expand indices of repeated counts"""
        a = array([0,1,0,1,2,0,3])
        #          0 1 2 3 4 5 6
        result = prep_items_for_jackknife(a)

src/p/y/pycogent-HEAD/tests/test_maths/test_unifrac/test_fast_tree.py   pycogent(Download)
from cogent.util.unit_test import TestCase, main
from cogent.parse.tree import DndParser
from cogent.maths.unifrac.fast_tree import (count_envs, sum_env_dict, 
    index_envs, get_branch_lengths, index_tree, bind_to_array, 
    bind_to_parent_array, _is_parent_empty, delete_empty_parents,
    def test_prep_items_for_jackknife(self):
        """prep_items_for_jackknife should expand indices of repeated counts"""
        a = array([0,1,0,1,2,0,3])
        #          0 1 2 3 4 5 6
        result = prep_items_for_jackknife(a)