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src/c/o/cogent-1.5.3/tests/test_maths/test_unifrac/test_fast_unifrac.py   cogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,

src/p/y/pycogent-HEAD/tests/test_maths/test_unifrac/test_fast_unifrac.py   pycogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,

src/q/i/qiime-HEAD/tests/test_alpha_diversity.py   qiime(Download)
 
from biom.table import table_factory, DenseOTUTable
from cogent.maths.unifrac.fast_unifrac import PD_whole_tree
from numpy import array
from numpy.testing import assert_almost_equal

src/q/i/qiime-1.8.0/tests/test_alpha_diversity.py   qiime(Download)
from os.path import exists
from cogent.util.unit_test import TestCase, main
from cogent.maths.unifrac.fast_unifrac import PD_whole_tree
#from cogent.maths.stats.alpha_diversity import (observed_species, osd)
from qiime.pycogent_backports.alpha_diversity import (observed_species, osd)