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src/q/i/qiime-1.8.0/scripts/beta_significance.py   qiime(Download)
import warnings
warnings.filterwarnings('ignore', 'Not using MPI as mpi4py not found')
from cogent.maths.unifrac.fast_unifrac import fast_unifrac_permutations_file, TEST_ON_PAIRWISE, TEST_ON_TREE, TEST_ON_ENVS
from cogent.maths.unifrac.fast_unifrac import fast_p_test_file
from qiime.util import parse_command_line_parameters
 
    if opts.type_of_test == 'all_together':
        type_of_test = TEST_ON_TREE
        header_text = "sample\tp value\tp value (Bonferroni corrected)\n"
    elif opts.type_of_test == 'each_pair':

src/q/i/qiime-HEAD/scripts/beta_significance.py   qiime(Download)
import warnings
warnings.filterwarnings('ignore', 'Not using MPI as mpi4py not found')
from cogent.maths.unifrac.fast_unifrac import fast_unifrac_permutations_file, TEST_ON_PAIRWISE, TEST_ON_TREE, TEST_ON_ENVS
from cogent.maths.unifrac.fast_unifrac import fast_p_test_file
from qiime.util import parse_command_line_parameters
 
    if opts.type_of_test == 'all_together':
        type_of_test = TEST_ON_TREE
        header_text = "sample\tp value\tp value (Bonferroni corrected)\n"
    elif opts.type_of_test == 'each_pair':

src/c/o/cogent-1.5.3/tests/test_maths/test_unifrac/test_fast_unifrac.py   cogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,

src/p/y/pycogent-HEAD/tests/test_maths/test_unifrac/test_fast_unifrac.py   pycogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,