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src/c/o/cogent-1.5.3/tests/test_maths/test_unifrac/test_fast_unifrac.py   cogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,
            real_ufracs, sim_ufracs = fast_unifrac_whole_tree(self.old_t, \
                self.old_env_counts, 1000, permutation_f=permutation)
            rawp, corp = mcarlo_sig(sum(real_ufracs), [sum(x) for x in \
                sim_ufracs], 1, tail='high')
            result.append(rawp)

src/p/y/pycogent-HEAD/tests/test_maths/test_unifrac/test_fast_unifrac.py   pycogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,
            real_ufracs, sim_ufracs = fast_unifrac_whole_tree(self.old_t, \
                self.old_env_counts, 1000, permutation_f=permutation)
            rawp, corp = mcarlo_sig(sum(real_ufracs), [sum(x) for x in \
                sim_ufracs], 1, tail='high')
            result.append(rawp)