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src/c/o/cogent-1.5.3/tests/test_maths/test_unifrac/test_fast_unifrac.py   cogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,
            [0,5,0,4,3],[0,2,0,1,0]])
        self.assertEqual(reshape_by_name(old, old_names, new_names), exp)
        result = reshape_by_name(old, old_names, new_names, masked=True)
        result.fill_value=0
        self.assertEqual(result._data * logical_not(result._mask), exp)

src/p/y/pycogent-HEAD/tests/test_maths/test_unifrac/test_fast_unifrac.py   pycogent(Download)
from cogent.maths.unifrac.fast_tree import (count_envs, index_tree, index_envs,
    get_branch_lengths)
from cogent.maths.unifrac.fast_unifrac import (reshape_by_name,
    meta_unifrac, shuffle_tipnames, weight_equally, weight_by_num_tips, 
    weight_by_branch_length, weight_by_num_seqs, get_all_env_names,
            [0,5,0,4,3],[0,2,0,1,0]])
        self.assertEqual(reshape_by_name(old, old_names, new_names), exp)
        result = reshape_by_name(old, old_names, new_names, masked=True)
        result.fill_value=0
        self.assertEqual(result._data * logical_not(result._mask), exp)