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src/c/o/cogent-1.5.3/cogent/motif/k_word.py   cogent(Download)
#!/usr/bin/env python
"""MotifFinder that searches for over-represented k-words in an alignment."""
 
from __future__ import division
from cogent.motif.util import Motif, Module, ModuleFinder, ModuleConsolidator, \
class KWordMotifFinder(MotifFinder):
    """Constructs a list of Motifs from a list of Modules.
 
        - Must be initialized with a list of Modules and an Alignment.
    """

src/p/y/pycogent-HEAD/cogent/motif/k_word.py   pycogent(Download)
#!/usr/bin/env python
"""MotifFinder that searches for over-represented k-words in an alignment."""
 
from __future__ import division
from cogent.motif.util import Motif, Module, ModuleFinder, ModuleConsolidator, \
class KWordMotifFinder(MotifFinder):
    """Constructs a list of Motifs from a list of Modules.
 
        - Must be initialized with a list of Modules and an Alignment.
    """