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src/c/o/cogent-1.5.3/cogent/format/motif.py   cogent(Download)
    def __init__(self,MotifResults=None):
        """init function for MotifStatsBySequence class"""
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)
    def __init__(self,MotifResults=None):
        """init function for MotifLocationsBySequence class"""
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)
    def __init__(self,MotifResults=None):
        """init function for MotifLocationsBySequence class"""
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)
        KeepAll: When True, ignores KeepIds and highlights all motifs
        """
        MotifFormatter.__init__(self)
        ModuleMap = self.makeModuleMap(MotifResults)
        module_ids = set([])
        FormTarget: Form target 
        """
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)

src/p/y/pycogent-HEAD/cogent/format/motif.py   pycogent(Download)
    def __init__(self,MotifResults=None):
        """init function for MotifStatsBySequence class"""
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)
    def __init__(self,MotifResults=None):
        """init function for MotifLocationsBySequence class"""
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)
    def __init__(self,MotifResults=None):
        """init function for MotifLocationsBySequence class"""
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)
        KeepAll: When True, ignores KeepIds and highlights all motifs
        """
        MotifFormatter.__init__(self)
        ModuleMap = self.makeModuleMap(MotifResults)
        module_ids = set([])
        FormTarget: Form target 
        """
        MotifFormatter.__init__(self)
        self.MotifResults = MotifResults
        self.ColorMap = self.getColorMap(MotifResults)