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All Samples(6)  |  Call(6)  |  Derive(0)  |  Import(0)

src/c/o/cogent-1.5.3/cogent/parse/meme.py   cogent(Download)
        #Extract modules and put in MotifResults.Modules list
        for module in module_blocks:
            meme_motif_results.Modules.append(extractModuleData(module,\
                alphabet,remap_dict))
        for module in meme_motif_results.Modules:

src/c/o/cogent-1.5.3/cogent/parse/gibbs.py   cogent(Download)
            continue
        for cur_smod in build_module_objects(module, sequence_map, truncate_len=truncate_len):
            gibbs_motif_results.Modules.append(cur_smod)
    module_ids_to_int(gibbs_motif_results.Modules)
 

src/c/o/cogent-1.5.3/cogent/motif/k_word.py   cogent(Download)
                module_id+=1
                #Append the module to the k_word_results Modules list
                k_word_results.Modules.append(module)
                #Create a Motif from the module and append to Motifs list
                k_word_results.Motifs.append(Motif(module))

src/p/y/pycogent-HEAD/cogent/parse/meme.py   pycogent(Download)
        #Extract modules and put in MotifResults.Modules list
        for module in module_blocks:
            meme_motif_results.Modules.append(extractModuleData(module,\
                alphabet,remap_dict))
        for module in meme_motif_results.Modules:

src/p/y/pycogent-HEAD/cogent/parse/gibbs.py   pycogent(Download)
            continue
        for cur_smod in build_module_objects(module, sequence_map, truncate_len=truncate_len):
            gibbs_motif_results.Modules.append(cur_smod)
    module_ids_to_int(gibbs_motif_results.Modules)
 

src/p/y/pycogent-HEAD/cogent/motif/k_word.py   pycogent(Download)
                module_id+=1
                #Append the module to the k_word_results Modules list
                k_word_results.Modules.append(module)
                #Create a Motif from the module and append to Motifs list
                k_word_results.Motifs.append(Motif(module))