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src/q/i/qiime-1.8.0/qiime/process_sff.py   qiime(Download)
#!/usr/bin/env python
#file process_sff.py
from cogent.util.misc import app_path
from cogent.app.util import ApplicationNotFoundError
from cogent.parse.binary_sff import (
    out.write(' length=%d' % (end_idx - start_idx))
 
    timestamp, _, region, location = decode_accession(read['Name'])
    out.write(' xy=%04d_%04d' % location)
    out.write(' region=%d' % region)

src/q/i/qiime-HEAD/qiime/process_sff.py   qiime(Download)
 
from skbio.app.util import ApplicationNotFoundError
from cogent.parse.binary_sff import (
    parse_binary_sff, format_binary_sff, write_binary_sff, decode_accession,
)
    out.write(' length=%d' % (end_idx - start_idx))
 
    timestamp, _, region, location = decode_accession(read['Name'])
    out.write(' xy=%04d_%04d' % location)
    out.write(' region=%d' % region)

src/c/o/cogent-1.5.3/tests/test_parse/test_binary_sff.py   cogent(Download)
from unittest import TestCase, main
 
from cogent.parse.binary_sff import (
    seek_pad, parse_common_header, parse_read_header, parse_read_data,
    validate_common_header, parse_read, parse_binary_sff, UnsupportedSffError,

src/p/y/pycogent-HEAD/tests/test_parse/test_binary_sff.py   pycogent(Download)
from unittest import TestCase, main
 
from cogent.parse.binary_sff import (
    seek_pad, parse_common_header, parse_read_header, parse_read_data,
    validate_common_header, parse_read, parse_binary_sff, UnsupportedSffError,