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src/q/i/qiime-1.8.0/qiime/denoiser/flowgram_clustering.py   qiime(Download)
from qiime.util import get_tmp_filename
from cogent.parse.flowgram_parser import lazy_parse_sff_handle
from cogent.parse.flowgram import Flowgram, seq_to_flow
from cogent.parse.flowgram_collection import FlowgramCollection
from cogent.parse.fasta import MinimalFastaParser
            log_remaining_rounds(ids, cluster_mapping, bail_out, log_fh)
 
        ideal_flow = seq_to_flow(seqs[key])
        (new_flowgrams, newl) = filter_with_flowgram(key, ideal_flow, flowgrams, header, ids,
                                                   l, bestscores, log_fh, outdir,