Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(6)  |  Call(4)  |  Derive(0)  |  Import(2)

src/c/o/cogent-1.5.3/cogent/core/alignment.py   cogent(Download)
from cogent.format.phylip import phylip_from_alignment
from cogent.format.nexus import nexus_from_alignment
from cogent.parse.gff import GffParser, parse_attributes
from numpy import nonzero, array, logical_or, logical_and, logical_not, \
    transpose, arange, zeros, ones, take, put, uint8, ndarray
        """
        for (name, source, feature, start, end, score,
                strand, frame, attributes, comments) in GffParser(f):
            if name in self.NamedSeqs:
                self.NamedSeqs[name].addFeature(    feature, 

src/p/y/pycogent-HEAD/cogent/core/alignment.py   pycogent(Download)
from cogent.format.phylip import phylip_from_alignment
from cogent.format.nexus import nexus_from_alignment
from cogent.parse.gff import GffParser, parse_attributes
from numpy import nonzero, array, logical_or, logical_and, logical_not, \
    transpose, arange, zeros, ones, take, put, uint8, ndarray
        """
        for (name, source, feature, start, end, score,
                strand, frame, attributes, comments) in GffParser(f):
            if name in self.NamedSeqs:
                self.NamedSeqs[name].addFeature(    feature, 

src/c/o/cogent-1.5.3/cogent/core/sequence.py   cogent(Download)
    def annotateFromGff(self, f):
        first_seqname = None
        for (seqname, source, feature, start, end, score, strand,
                frame, attributes, comments) in gff.GffParser(f):
            if first_seqname is None:

src/p/y/pycogent-HEAD/cogent/core/sequence.py   pycogent(Download)
    def annotateFromGff(self, f):
        first_seqname = None
        for (seqname, source, feature, start, end, score, strand,
                frame, attributes, comments) in gff.GffParser(f):
            if first_seqname is None: