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src/c/o/cogent-1.5.3/cogent/core/alignment.py   cogent(Download)
from cogent.format.phylip import phylip_from_alignment
from cogent.format.nexus import nexus_from_alignment
from cogent.parse.gff import GffParser, parse_attributes
from numpy import nonzero, array, logical_or, logical_and, logical_not, \
    transpose, arange, zeros, ones, take, put, uint8, ndarray
            if name in self.NamedSeqs:
                self.NamedSeqs[name].addFeature(    feature, 
                                    parse_attributes(attributes), 
                                    [(start,end)])
 

src/p/y/pycogent-HEAD/cogent/core/alignment.py   pycogent(Download)
from cogent.format.phylip import phylip_from_alignment
from cogent.format.nexus import nexus_from_alignment
from cogent.parse.gff import GffParser, parse_attributes
from numpy import nonzero, array, logical_or, logical_and, logical_not, \
    transpose, arange, zeros, ones, take, put, uint8, ndarray
            if name in self.NamedSeqs:
                self.NamedSeqs[name].addFeature(    feature, 
                                    parse_attributes(attributes), 
                                    [(start,end)])
 

src/c/o/cogent-1.5.3/cogent/core/sequence.py   cogent(Download)
            else:
                assert seqname == first_seqname, (seqname, first_seqname)
            feat_label = gff.parse_attributes(attributes)
            self.addFeature(feature, feat_label, [(start, end)])
 

src/p/y/pycogent-HEAD/cogent/core/sequence.py   pycogent(Download)
            else:
                assert seqname == first_seqname, (seqname, first_seqname)
            feat_label = gff.parse_attributes(attributes)
            self.addFeature(feature, feat_label, [(start, end)])