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src/c/o/cogent-1.5.3/tests/test_parse/test_gibbs.py   cogent(Download)
from cogent.parse.record import DelimitedSplitter
from cogent.parse.record_finder import LabeledRecordFinder
from cogent.parse.gibbs import get_sequence_and_motif_blocks, get_sequence_map,\
    get_motif_blocks, get_motif_sequences, get_motif_p_value, guess_alphabet,\
    build_module_objects, module_ids_to_int, GibbsParser
                      ('8', 67, 'VISVSEDTVYVH', 1.0, '1'),\
                      ('9', 65, 'VIGISVDSPFSL', 1.0, '1')]
        alphabet = guess_alphabet(motif_list)
        self.assertEqual(alphabet,PROTEIN)
 

src/p/y/pycogent-HEAD/tests/test_parse/test_gibbs.py   pycogent(Download)
from cogent.parse.record import DelimitedSplitter
from cogent.parse.record_finder import LabeledRecordFinder
from cogent.parse.gibbs import get_sequence_and_motif_blocks, get_sequence_map,\
    get_motif_blocks, get_motif_sequences, get_motif_p_value, guess_alphabet,\
    build_module_objects, module_ids_to_int, GibbsParser
                      ('8', 67, 'VISVSEDTVYVH', 1.0, '1'),\
                      ('9', 65, 'VIGISVDSPFSL', 1.0, '1')]
        alphabet = guess_alphabet(motif_list)
        self.assertEqual(alphabet,PROTEIN)