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src/c/o/cogent-1.5.3/cogent/app/infernal.py   cogent(Download)
from cogent.app.util import CommandLineApplication, ResultPath, get_tmp_filename
from cogent.parse.fasta import MinimalFastaParser
from cogent.parse.rfam import MinimalRfamParser, ChangedSequence, \
    ChangedRnaSequence, ChangedDnaSequence
from cogent.parse.infernal import CmsearchParser

src/p/y/pycogent-HEAD/cogent/app/infernal.py   pycogent(Download)
from cogent.app.util import CommandLineApplication, ResultPath, get_tmp_filename
from cogent.parse.fasta import MinimalFastaParser
from cogent.parse.rfam import MinimalRfamParser, ChangedSequence, \
    ChangedRnaSequence, ChangedDnaSequence
from cogent.parse.infernal import CmsearchParser

src/p/y/pycogent-HEAD/tests/test_app/test_infernal.py   pycogent(Download)
    cmalign_from_alignment, cmalign_from_file, cmsearch_from_alignment,\
    cmsearch_from_file
from cogent.parse.rfam import MinimalRfamParser, ChangedRnaSequence, \
    ChangedSequence
from cogent.format.stockholm import stockholm_from_alignment

src/c/o/cogent-1.5.3/tests/test_app/test_infernal.py   cogent(Download)
    cmalign_from_alignment, cmalign_from_file, cmsearch_from_alignment,\
    cmsearch_from_file
from cogent.parse.rfam import MinimalRfamParser, ChangedRnaSequence, \
    ChangedSequence
from cogent.format.stockholm import stockholm_from_alignment