Did I find the right examples for you? yes no      Crawl my project      Python Jobs

All Samples(24)  |  Call(22)  |  Derive(0)  |  Import(2)

src/c/o/cogent-1.5.3/tests/test_parse/test_rnaview.py   cogent(Download)
 
from cogent.util.unit_test import TestCase, main
from cogent.parse.rnaview import is_roman_numeral, is_edge, is_orientation,\
    parse_annotation, parse_uncommon_residues, parse_base_pairs,\
    parse_base_multiplets, parse_pair_counts, MinimalRnaviewParser,\
        b2 = Base('A','35','G')
        b3 = Base('A','360','U')
        bm = BaseMultiplet([b1, b2, b3])
        self.failUnless(bm[0] is b1)
        self.failUnless(bm[2] is b3)
        #should work from tuple also
        bm = BaseMultiplet((b1, b2, b3))
        b2 = Base('A','35','G')
        b3 = Base('A','360','U')
        bm = BaseMultiplet([b1, b2, b3])
        exp = "A 30 A -- A 35 G -- A 360 U;"
        self.assertEqual(str(bm), exp)
        b2 = Base('A','35','G')
        b3 = Base('A','360','U')
        bm1 = BaseMultiplet([b1, b2, b3])
        b4 = Base('B','12','C')
        b5 = Base('B','42','U')

src/p/y/pycogent-HEAD/tests/test_parse/test_rnaview.py   pycogent(Download)
 
from cogent.util.unit_test import TestCase, main
from cogent.parse.rnaview import is_roman_numeral, is_edge, is_orientation,\
    parse_annotation, parse_uncommon_residues, parse_base_pairs,\
    parse_base_multiplets, parse_pair_counts, MinimalRnaviewParser,\
        b2 = Base('A','35','G')
        b3 = Base('A','360','U')
        bm = BaseMultiplet([b1, b2, b3])
        self.failUnless(bm[0] is b1)
        self.failUnless(bm[2] is b3)
        #should work from tuple also
        bm = BaseMultiplet((b1, b2, b3))
        b2 = Base('A','35','G')
        b3 = Base('A','360','U')
        bm = BaseMultiplet([b1, b2, b3])
        exp = "A 30 A -- A 35 G -- A 360 U;"
        self.assertEqual(str(bm), exp)
        b2 = Base('A','35','G')
        b3 = Base('A','360','U')
        bm1 = BaseMultiplet([b1, b2, b3])
        b4 = Base('B','12','C')
        b5 = Base('B','42','U')