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src/c/o/cogent-1.5.3/cogent/struct/asa.py   cogent(Download)
"""Classes and functions for computing and manipulating accessible 
surface areas (ASA)."""
 
from cogent.app.stride import Stride
from cogent.parse.stride import stride_parser
        stride_app = Stride()
        result = stride_app(entities)['StdOut'].readlines()
        result = stride_parser(result)
        xtradata(result, structures.values()[0][(0,)])
    else:

src/c/o/cogent-1.5.3/cogent/app/stride.py   cogent(Download)
 
from cogent.struct.selection import einput
from cogent.parse.stride import stride_parser
from cogent.struct.annotation import xtradata
from cogent.app.util import CommandLineApplication, ResultPath
    stride_app = Stride(**kwargs)
    result = stride_app(entities)['StdOut'].readlines()
    result = stride_parser(result)
    xtradata(result, structures.values()[0][(0,)])
    return result

src/p/y/pycogent-HEAD/cogent/struct/asa.py   pycogent(Download)
"""Classes and functions for computing and manipulating accessible 
surface areas (ASA)."""
 
from cogent.app.stride import Stride
from cogent.parse.stride import stride_parser
        stride_app = Stride()
        result = stride_app(entities)['StdOut'].readlines()
        result = stride_parser(result)
        xtradata(result, structures.values()[0][(0,)])
    else:

src/p/y/pycogent-HEAD/cogent/app/stride.py   pycogent(Download)
 
from cogent.struct.selection import einput
from cogent.parse.stride import stride_parser
from cogent.struct.annotation import xtradata
from cogent.app.util import CommandLineApplication, ResultPath
    stride_app = Stride(**kwargs)
    result = stride_app(entities)['StdOut'].readlines()
    result = stride_parser(result)
    xtradata(result, structures.values()[0][(0,)])
    return result

src/p/y/pycogent-HEAD/tests/test_parse/test_stride.py   pycogent(Download)
    from cogent.struct.selection import einput
    from cogent.parse.pdb import PDBParser
    from cogent.parse.stride import stride_parser
    from cogent.app.stride import Stride, stride_xtra
except ImportError:

src/c/o/cogent-1.5.3/tests/test_parse/test_stride.py   cogent(Download)
    from cogent.struct.selection import einput
    from cogent.parse.pdb import PDBParser
    from cogent.parse.stride import stride_parser
    from cogent.app.stride import Stride, stride_xtra
except ImportError: