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src/c/o/cogent-1.5.3/tests/test_struct/test_knots.py   cogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
    def test_init_valid(self):
        """PairedRegion __init__: should work as expected on valid input
        """
        pr = PairedRegion(3,10,2)
        self.assertEqual(pr.Start, 3)
        self.assertEqual(pr.End, 10)
        self.assertEqual(pr.Length, 2)
        self.assertEqual(pr.Pairs, [(3,10),(4,9)])
 
        pr = PairedRegion(3,10,2, Id=0)
        pr = PairedRegion(3,10,2, Id=0)
        self.assertEqual(pr.Id, 0)
        pr = PairedRegion(3,10,2, Id='A')
        self.assertEqual(pr.Id, 'A')
 
    def test_init_weird(self):
        """PairedRegion __init__: no error checking
        """
        pr = PairedRegion(3,6,4)
        self.assertEqual(pr.Start, 3)

src/p/y/pycogent-HEAD/tests/test_struct/test_knots.py   pycogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
    def test_init_valid(self):
        """PairedRegion __init__: should work as expected on valid input
        """
        pr = PairedRegion(3,10,2)
        self.assertEqual(pr.Start, 3)
        self.assertEqual(pr.End, 10)
        self.assertEqual(pr.Length, 2)
        self.assertEqual(pr.Pairs, [(3,10),(4,9)])
 
        pr = PairedRegion(3,10,2, Id=0)
        pr = PairedRegion(3,10,2, Id=0)
        self.assertEqual(pr.Id, 0)
        pr = PairedRegion(3,10,2, Id='A')
        self.assertEqual(pr.Id, 'A')
 
    def test_init_weird(self):
        """PairedRegion __init__: no error checking
        """
        pr = PairedRegion(3,6,4)
        self.assertEqual(pr.Start, 3)