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All Samples(6)  |  Call(4)  |  Derive(0)  |  Import(2)

src/c/o/cogent-1.5.3/tests/test_struct/test_knots.py   cogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
    def test_PairedRegionFromPairs(self):
        """PairedRegionFromPairs: should handle valid input"""
        p = Pairs([(3,10),(4,9),(5,8)])
        pr = PairedRegionFromPairs(p, Id='A')
        self.assertEqual(pr.Start, 3)
        # no error checking on input pairs...
        p = Pairs([(3,10),(4,9),(6,8)]) # not a real paired region
        pr = PairedRegionFromPairs(p, Id='A')
        self.assertEqual(pr.Start, 3)
        self.assertEqual(pr.End, 10)

src/p/y/pycogent-HEAD/tests/test_struct/test_knots.py   pycogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
    def test_PairedRegionFromPairs(self):
        """PairedRegionFromPairs: should handle valid input"""
        p = Pairs([(3,10),(4,9),(5,8)])
        pr = PairedRegionFromPairs(p, Id='A')
        self.assertEqual(pr.Start, 3)
        # no error checking on input pairs...
        p = Pairs([(3,10),(4,9),(6,8)]) # not a real paired region
        pr = PairedRegionFromPairs(p, Id='A')
        self.assertEqual(pr.Start, 3)
        self.assertEqual(pr.End, 10)