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src/c/o/cogent-1.5.3/tests/test_struct/test_knots.py   cogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
        pr4 = PairedRegion(84, 96, 3, Id=4)
        prs = PairedRegions([pr0, pr1, pr2, pr3, pr4])
        obs = matrix_solutions(prs)
        self.assertEqual(obs, [PairedRegions([pr0,pr3,pr4])])
 
        pr = PairedRegion(2,20, 5, Id='A')
        prs = PairedRegions([pr])
        obs = matrix_solutions(prs)
        self.assertEqual(obs, [prs])
 

src/p/y/pycogent-HEAD/tests/test_struct/test_knots.py   pycogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
        pr4 = PairedRegion(84, 96, 3, Id=4)
        prs = PairedRegions([pr0, pr1, pr2, pr3, pr4])
        obs = matrix_solutions(prs)
        self.assertEqual(obs, [PairedRegions([pr0,pr3,pr4])])
 
        pr = PairedRegion(2,20, 5, Id='A')
        prs = PairedRegions([pr])
        obs = matrix_solutions(prs)
        self.assertEqual(obs, [prs])