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All Samples(4)  |  Call(2)  |  Derive(0)  |  Import(2)

src/c/o/cogent-1.5.3/tests/test_struct/test_knots.py   cogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
        m = nussinov_fill(p,size=10)
        exp = set([(0,7),(1,6),(2,5)])
        obs = nussinov_traceback(m, 0, 9, p)
        self.assertEqual(obs, exp)
 

src/p/y/pycogent-HEAD/tests/test_struct/test_knots.py   pycogent(Download)
from cogent.util.dict2d import Dict2D
from cogent.struct.rna2d import Pairs
from cogent.struct.knots import PairedRegion, PairedRegionFromPairs,\
    PairedRegions, PairedRegionsFromPairs, ConflictMatrix,\
    opt_all, contains_true, empty_matrix,\
        m = nussinov_fill(p,size=10)
        exp = set([(0,7),(1,6),(2,5)])
        obs = nussinov_traceback(m, 0, 9, p)
        self.assertEqual(obs, exp)