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# cogent.struct.rna2d.Pairs.append

All Samples(14)  |  Call(14)  |  Derive(0)  |  Import(0)

src/c/o/cogent-1.5.3/cogent/struct/knots.py   cogent(Download)
```        self.Pairs = Pairs()
for i in range(self.Length):
self.Pairs.append((self.Start+i, self.End-i))

def __str__(self):
```
```            nested = []
for x,y in t:
nested.append((mapped_back[x], mapped_back[y]))
else:
# sequence short enough, fill matrix directly
```
```        for bp in p:
if bp not in nested:
removed.append(bp)
return nested, removed
else:
```

src/p/y/pycogent-HEAD/cogent/struct/knots.py   pycogent(Download)
```        self.Pairs = Pairs()
for i in range(self.Length):
self.Pairs.append((self.Start+i, self.End-i))

def __str__(self):
```
```            nested = []
for x,y in t:
nested.append((mapped_back[x], mapped_back[y]))
else:
# sequence short enough, fill matrix directly
```
```        for bp in p:
if bp not in nested:
removed.append(bp)
return nested, removed
else:
```

src/c/o/cogent-1.5.3/cogent/struct/pairs_util.py   cogent(Download)
```        else:
new_y = y
result.append((new_x, new_y))
assert len(result) == len(pairs)
return result
```
```        else:
new_y = mapping[y]
result.append((new_x, new_y))

return result
```
```            else:
new_down = down
result.append((new_up, new_down))
return result

```
```        else:
new_y = y
new.append((new_x, new_y))
return new

```

src/p/y/pycogent-HEAD/cogent/struct/pairs_util.py   pycogent(Download)
```        else:
new_y = y
result.append((new_x, new_y))
assert len(result) == len(pairs)
return result
```
```        else:
new_y = mapping[y]
result.append((new_x, new_y))

return result
```
```            else:
new_down = down
result.append((new_up, new_down))
return result

```
```        else:
new_y = y
new.append((new_x, new_y))
return new

```