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All Samples(4)  |  Call(4)  |  Derive(0)  |  Import(0)

src/c/o/cogent-1.5.3/cogent/struct/knots.py   cogent(Download)
    if raw_pairs.hasConflicts():
        raise ValueError("Cannot handle pairs with conflicts")
    p = raw_pairs.directed()
    p.sort()
    # initialize variables
    if p.hasConflicts():
        raise ValueError("Cannot handle base pair conflicts")
    clean_pairs = p.directed()
    clean_pairs.sort()
    regions = []

src/p/y/pycogent-HEAD/cogent/struct/knots.py   pycogent(Download)
    if raw_pairs.hasConflicts():
        raise ValueError("Cannot handle pairs with conflicts")
    p = raw_pairs.directed()
    p.sort()
    # initialize variables
    if p.hasConflicts():
        raise ValueError("Cannot handle base pair conflicts")
    clean_pairs = p.directed()
    clean_pairs.sort()
    regions = []