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All Samples(12)  |  Call(12)  |  Derive(0)  |  Import(0)

src/c/o/cogent-1.5.3/cogent/struct/knots.py   cogent(Download)
        result = Pairs()
        for pr in self:
            result.extend(pr.Pairs)
        result.sort()
        return result
        removed = Pairs([])
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
        removed = Pairs([])
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
        removed = Pairs([])
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed

src/p/y/pycogent-HEAD/cogent/struct/knots.py   pycogent(Download)
        result = Pairs()
        for pr in self:
            result.extend(pr.Pairs)
        result.sort()
        return result
        removed = Pairs([])
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
        removed = Pairs([])
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
        removed = Pairs([])
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed

src/c/o/cogent-1.5.3/cogent/struct/pairs_util.py   cogent(Download)
    if not gap_list:
        result = Pairs()
        result.extend(pairs)
        return result
 
    if not gap_list:
        new = Pairs()
        new.extend(pairs)
        return new
 

src/p/y/pycogent-HEAD/cogent/struct/pairs_util.py   pycogent(Download)
    if not gap_list:
        result = Pairs()
        result.extend(pairs)
        return result
 
    if not gap_list:
        new = Pairs()
        new.extend(pairs)
        return new