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All Samples(10)  |  Call(10)  |  Derive(0)  |  Import(0)

src/c/o/cogent-1.5.3/cogent/struct/knots.py   cogent(Download)
        for pr in self:
            result.extend(pr.Pairs)
        result.sort()
        return result
 
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
    return result.toPairs()
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
    return result.toPairs()
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
    return result.toPairs()
            nested = nussinov_traceback(m, 0, max_idx-1, p)
            nested = Pairs(list(nested))
        nested.sort()
    if return_removed:
        removed = Pairs([])

src/p/y/pycogent-HEAD/cogent/struct/knots.py   pycogent(Download)
        for pr in self:
            result.extend(pr.Pairs)
        result.sort()
        return result
 
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
    return result.toPairs()
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
    return result.toPairs()
        for pr_id in excluded:
            removed.extend(id_to_pr[pr_id].Pairs)
        removed.sort()
        return result.toPairs(), removed
    return result.toPairs()
            nested = nussinov_traceback(m, 0, max_idx-1, p)
            nested = Pairs(list(nested))
        nested.sort()
    if return_removed:
        removed = Pairs([])