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src/c/o/cogent-1.5.3/cogent/phylo/distance.py   cogent(Download)
#!/usr/bin/env python
"""Estimating pairwise distances between sequences.
"""
from cogent.util import parallel, table, warning, progress_display as UI
from cogent.maths.stats.util import Numbers

src/p/y/pycogent-HEAD/cogent/phylo/distance.py   pycogent(Download)
from itertools import combinations
 
from cogent.util import parallel, table, warning, progress_display as UI
from cogent.maths.stats.util import Numbers
from cogent import LoadSeqs, LoadTree

src/c/o/cogent-1.5.3/cogent/phylo/tree_space.py   cogent(Download)
from cogent.core.tree import TreeBuilder
from cogent.phylo.tree_collection import ScoredTreeCollection
from cogent.util import parallel, checkpointing, progress_display as UI
 
__author__ = "Peter Maxwell"

src/p/y/pycogent-HEAD/cogent/phylo/tree_space.py   pycogent(Download)
from cogent.core.tree import TreeBuilder
from cogent.phylo.tree_collection import ScoredTreeCollection
from cogent.util import parallel, checkpointing, progress_display as UI
 
__author__ = "Peter Maxwell"

src/c/o/cogent-1.5.3/cogent/evolve/bootstrap.py   cogent(Download)
from __future__ import with_statement, division
from cogent.util import parallel
from cogent.util import progress_display as UI
 
import random

src/p/y/pycogent-HEAD/cogent/evolve/bootstrap.py   pycogent(Download)
from __future__ import with_statement, division
from cogent.util import parallel
from cogent.util import progress_display as UI
 
import random

src/c/o/cogent-1.5.3/cogent/util/parallel.py   cogent(Download)
    def _initWorkerProcess(self):
        from cogent.util import progress_display
        progress_display.CURRENT.context = progress_display.NULL_CONTEXT
 
    def imap(self, f, s, chunksize=1):

src/c/o/cogent-1.5.3/cogent/phylo/nj.py   cogent(Download)
from cogent.phylo.tree_collection import ScoredTreeCollection
from cogent.phylo.util import distanceDictTo2D
from cogent.util import progress_display as UI
from collections import deque
 

src/c/o/cogent-1.5.3/cogent/maths/optimisers.py   cogent(Download)
"""
 
from cogent.util import progress_display as UI
from simannealingoptimiser import SimulatedAnnealing
from scipy_optimisers import DownhillSimplex, Powell

src/c/o/cogent-1.5.3/cogent/align/pycompare.py   cogent(Download)
#!/usr/bin/env python
# Very slow.  See compare.pyx
 
from __future__ import division
import cogent.util.progress_display as UI

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