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int(x=0) -> int or long
int(x, base=10) -> int or long

Convert a number or string to an integer, or return 0 if no arguments
are given.  If x is floating point, the conversion truncates towards zero.
If x is outside the integer range, the function returns a long instead.

If x is not a number or if base is given, then x must be a string or
Unicode object representing an integer literal in the given base.  The
literal can be preceded by '+' or '-' and be surrounded by whitespace.(more...)

src/c/o/CombiVEP-0.1.2/combivep/preproc/reader.py   CombiVEP(Download)
    def fetch_hash_snps(self, chromosome, start_pos, end_pos):
        for rec in self.fetch_array_snps(chromosome, start_pos, end_pos):
            if len(rec) != combivep_settings.UCSC_EXPECTED_LENGTH :
                raise Exception("Invalid formatting is found in file '%s'>> Chrom : %s\tStart pos : %s\tEnd pos : %s" % (self.db_file_name, rec[combivep_settings.UCSC_0_INDEX_CHROM], rec[combivep_settings.UCSC_0_INDEX_START_POS], rec[combivep_settings.UCSC_0_INDEX_END_POS]))
            snp_info = {combivep_settings.KEY_UCSC_CHROM     : rec[combivep_settings.UCSC_0_INDEX_CHROM], 

src/c/o/CombiVEP-0.1.2/combivep/refdb/control.py   CombiVEP(Download)
        return pysam.tabix_index(file_name,
                                 force     = True,
                                 seq_col   = combivep_settings.UCSC_0_INDEX_CHROM,
                                 start_col = combivep_settings.UCSC_0_INDEX_START_POS,
                                 end_col   = combivep_settings.UCSC_0_INDEX_END_POS,