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CombiVEP base class 

src/c/o/CombiVEP-0.1.2/combivep/preproc/reader.py   CombiVEP(Download)
import pysam
import combivep.settings as combivep_settings
from combivep.template import CombiVEPBase
 
 
class UcscReader(CombiVEPBase):
class LjbReader(CombiVEPBase):
    """to read parsed LJB file"""
 
 
    def __init__(self):
class VcfReader(CombiVEPBase):
    """to read parsed VCF file"""
 
 
    def __init__(self):
class CbvReader(CombiVEPBase):
    """
 
    to read parsed SNPS file
    The format are CHROM, POS, REF, ALT, EFFECT.

src/c/o/CombiVEP-0.1.2/combivep/refdb/updater.py   CombiVEP(Download)
import zipfile
import combivep.settings as combivep_settings
from combivep.template import CombiVEPBase
#import combivep.template as main_template
 
class Downloader(CombiVEPBase):
    """to download file"""
 
 
    def __init__(self):

src/c/o/CombiVEP-0.1.2/combivep/preproc/dataset.py   CombiVEP(Download)
import math
import random
import numpy as np
from combivep.template import CombiVEPBase
import combivep.settings as combivep_settings
class DataSetManager(CombiVEPBase):
 
 
    def __init__(self, config_file=combivep_settings.COMBIVEP_CONFIGURATION_FILE):
        CombiVEPBase.__init__(self)