common.Tree.robinson_foulds

All Samples(3) | Call(3) | Derive(0) | Import(0)

src/e/t/ete-HEAD/tools/ete_tools/ete_dist.py ete(Download)

                                n.support = tt.get_common_ancestor(subtree_content[n]).support
 
                    rf, maxr, common, p1, p2, d1, d2 = t.robinson_foulds(subtree, expand_polytomies=args.polytomies, unrooted_trees=args.unrooted,
                                                                         attr_t2='species', min_support_t2=args.min_support)
                    if maxr > 0 and p1 and p2:

            ndups, ntrees, used_subtrees = 0, 1, 1
            treeko_d = -1
            total_rf, max_rf, common, p1, p2, d1, d2 = tt.robinson_foulds(t, expand_polytomies=args.polytomies, unrooted_trees=args.unrooted)
            common_names = len(common)
            if max_rf:

src/e/t/ete-HEAD/tools/ete_tools/ete_diff.py ete(Download)

            show_difftable_tab(difftable)
        elif args.report == 'table':
            rf, rf_max, _, _, _, _, _ = t1.robinson_foulds(t2, attr_t1=args.ref_attr, attr_t2=args.target_attr)[:2]
            show_difftable_summary(difftable, rf, rf_max)