Did I find the right examples for you? yes no

All Samples(5)  |  Call(0)  |  Derive(0)  |  Import(5)

src/r/t/rtd-HEAD/initialize_sample_DB.py   rtd(Download)
import sys,os
 
adapt_data = os.path.join(config.RTDROOT,'DB_index_by_well.csv')
 
try:

src/r/t/rtd-HEAD/preprocess_radtag_lane_vlbc.py   rtd(Download)
from editdist import distance
from glob import glob
from config import EMAIL,PASS,SOURCE,LIBRARY_DATA,ADAPTER_DATA,RTDROOT
 
def dezip(values_in):
 
        if opts.estimate_error:
            os.system(os.path.join(RTDROOT,'estimate_error_by_clustering.py %s %s %s %s %s %s %s' % (outfile, opts.cutsite, opts.est_err_engine, opts.est_err_cores, opts.est_err_parts, opts.est_err_threads, opts.est_err_radius)))
 
    #done

src/r/t/rtd-HEAD/preprocess_radtag_lane.py   rtd(Download)
from editdist import distance
from glob import glob
from config import EMAIL,PASS,SOURCE,LIBRARY_DATA,ADAPTER_DATA,RTDROOT
 
def dezip(values_in):
 
        if opts.estimate_error:
            os.system(os.path.join(RTDROOT,'estimate_error_by_clustering.py %s %s %s %s %s %s %s' % (outfile, opts.cutsite, opts.est_err_engine, opts.est_err_cores, opts.est_err_parts, opts.est_err_threads, opts.est_err_radius)))
 
    #done

src/r/t/rtd-HEAD/estimate_error_by_clustering.py   rtd(Download)
#!/usr/bin/env python
 
import os, sys
from config import RTDROOT
from preprocess_radtag_lane import smartopen
 
    err_clust_root = outfile.rstrip('.gz') + '-rtd'
    cmd = os.path.join(RTDROOT,'rtd_run.py --cleanup -pe %s -np %s -nc %s -I %s -te %s -s %s -cs %s %s' % (engine,parts, cores, radius, threads, cutsite, err_clust_root, outfile))
    print >> sys.stderr, cmd
    ret = os.system(cmd)

src/r/t/rtd-HEAD/sam_from_clust_uniqued.py   rtd(Download)
 
from collections import defaultdict
from config import RTDROOT
 
def next_cluster_lines(fh):
 
    clstats_fh.close()
    os.system(os.path.join(RTDROOT,'plot_error.py %s > %s' % (fbase+'.clstats',fbase+'.clstats.cdest' )))
 
    #finish headers (@RG lines)

src/r/t/rtd-HEAD/rtd_run.py   rtd(Download)
'''
 
from config import RTDROOT as radtag_denovo
from preprocess_radtag_lane import get_baseQ,smartopen,get_read_count