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str(object='') -> string

Return a nice string representation of the object.
If the argument is a string, the return value is the same object.

src/s/e/seq_crumbs-HEAD/crumbs/seq.py   seq_crumbs(Download)
 
from crumbs.utils.optional_modules import SeqRecord
from crumbs.utils.tags import (SEQITEM, SEQRECORD, ILLUMINA_QUALITY,
                               SANGER_QUALITY, SANGER_FASTQ_FORMATS,
                               ILLUMINA_FASTQ_FORMATS)
def _int_quals_to_str_quals(int_quals, out_format):
    if out_format == SANGER_QUALITY:
        quals_map = SANGER_STRS
    elif out_format == ILLUMINA_QUALITY:
        quals_map = ILLUMINA_STRS
def get_str_qualities(seq, out_format=None):
    if out_format is None:
        out_format = seq.file_format
    if out_format in SANGER_FASTQ_FORMATS:
        out_format = SANGER_QUALITY
            raise ValueError('A fasta file has no qualities')
        if in_format in SANGER_FASTQ_FORMATS:
            in_format = SANGER_QUALITY
        elif in_format in ILLUMINA_FASTQ_FORMATS:
            in_format = ILLUMINA_QUALITY