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src/n/i/nibabel-1.3.0/nibabel/nifti1.py   nibabel(Download)
import numpy.linalg as npl
 
from .py3k import ZEROB, ints2bytes, asbytes, asstr
from .volumeutils import Recoder, make_dt_codes, endian_codes
from .spatialimages import HeaderDataError, ImageFileError
        n_params = len(recoder.parameters[code])
        params = (float(hdr['intent_p%d' % (i+1)]) for i in range(n_params))
        name = asstr(np.asscalar(hdr['intent_name']))
        return label, tuple(params), name
 
            # unrecognized nii magic string, oh dear
            rep.problem_msg = ('magic string "%s" is not valid' %
                               asstr(magic))
            rep.problem_level = 45
            if fix:

src/n/i/nibabel-1.3.0/nibabel/nicom/csareader.py   nibabel(Download)
import numpy as np
 
from ..py3k import ZEROB, asbytes, asstr
from .structreader import Unpacker
 
    if zero_pos == -1:
        return s
    return asstr(s[:zero_pos])
 

src/n/i/nibabel-1.3.0/nibabel/externals/netcdf.py   nibabel(Download)
 
import numpy as np
from ..py3k import asbytes, asstr
from numpy import fromstring, ndarray, dtype, empty, array, asarray
from numpy import little_endian as LITTLE_ENDIAN
 
        for dim in range(count):
            name = asstr(self._unpack_string())
            length = self._unpack_int() or None  # None for record dimension
            self.dimensions[name] = length
        attributes = {}
        for attr in range(count):
            name = asstr(self._unpack_string())
            attributes[name] = self._read_values()
        return attributes
    def _read_var(self):
        name = asstr(self._unpack_string())
        dimensions = []
        shape = []
        dims = self._unpack_int()

src/n/i/nibabel-1.3.0/nibabel/minc.py   nibabel(Download)
from .externals.netcdf import netcdf_file
 
from .py3k import asbytes, asstr
from .spatialimages import SpatialImage
 
            dtt = np.dtype(np.float64)
        else:
            signtype = asstr(self._image.signtype)
            dtt = _dt_dict[(typecode, signtype)]
        return np.dtype(dtt).newbyteorder('>')

src/n/i/nibabel-HEAD/nibabel/externals/netcdf.py   nibabel(Download)
 
import numpy as np
from ..py3k import asbytes, asstr
from numpy import fromstring, ndarray, dtype, empty, array, asarray
from numpy import little_endian as LITTLE_ENDIAN
 
        for dim in range(count):
            name = asstr(self._unpack_string())
            length = self._unpack_int() or None  # None for record dimension
            self.dimensions[name] = length
        attributes = {}
        for attr in range(count):
            name = asstr(self._unpack_string())
            attributes[name] = self._read_values()
        return attributes
    def _read_var(self):
        name = asstr(self._unpack_string())
        dimensions = []
        shape = []
        dims = self._unpack_int()

src/n/i/nibabel-1.3.0/nibabel/trackvis.py   nibabel(Download)
import numpy.linalg as npl
 
from .py3k import asbytes, asstr
from .volumeutils import (native_code, swapped_code, endian_codes,
                          allopen, rec2dict)
                              'field value %s' % (aff_zooms, zooms))
        aff_order = ''.join(aff2axcodes(affine))
        voxel_order = asstr(np.asscalar(hdr['voxel_order']))
        if voxel_order == '':
            voxel_order = 'LPS' # trackvis default
    # Next we check against the 'voxel_order' field if present and not empty.
    try:
        voxel_order = asstr(np.asscalar(trk_hdr['voxel_order']))
    except KeyError, ValueError:
        voxel_order = ''

src/n/i/nibabel-HEAD/nibabel/nicom/utils.py   nibabel(Download)
""" Utilities for working with DICOM datasets
"""
from __future__ import division, print_function, absolute_import
 
from ..py3k import asstr
    is_regex = hasattr(creator, 'search')
    if not is_regex: # assume string / bytes
        creator = asstr(creator)
    for element in dcm_data: # Assumed ordered by tag (groupno, elno)
        grpno, elno = element.tag.group, element.tag.elem
        if element.VR not in ('LO', 'OB'):
            continue
        name = asstr(element.value)
        if is_regex:
            if creator.search(name) != None:

src/n/i/nibabel-HEAD/nibabel/trackvis.py   nibabel(Download)
import numpy.linalg as npl
 
from .py3k import asstr
from .volumeutils import (native_code, swapped_code, endian_codes, rec2dict)
from .volumeutils import BinOpener
                              'field value %s' % (aff_zooms, zooms))
        aff_order = ''.join(aff2axcodes(affine))
        voxel_order = asstr(np.asscalar(hdr['voxel_order']))
        if voxel_order == '':
            voxel_order = 'LPS' # trackvis default
    # Next we check against the 'voxel_order' field if present and not empty.
    try:
        voxel_order = asstr(np.asscalar(trk_hdr['voxel_order']))
    except (KeyError, ValueError):
        voxel_order = ''

src/n/i/nibabel-HEAD/nibabel/nifti1.py   nibabel(Download)
import numpy.linalg as npl
 
from .py3k import asstr
from .volumeutils import Recoder, make_dt_codes, endian_codes
from .spatialimages import HeaderDataError, ImageFileError
        n_params = len(recoder.parameters[code])
        params = (float(hdr['intent_p%d' % (i+1)]) for i in range(n_params))
        name = asstr(np.asscalar(hdr['intent_name']))
        return label, tuple(params), name
 
            return hdr, rep
        rep.problem_msg = ('magic string "%s" is not valid' %
                            asstr(magic))
        rep.problem_level = 45
        if fix: