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src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_bwa_memory.py   seal(Download)
  print_meminfo("AFTER REFINE_GAPPED")
  for k in xrange(l):
    v1 = bwa.analyze_hit(gopt[0], bnsp, bwsa[0][k], bwsa[1][k])
    v2 = bwa.analyze_hit(gopt[0], bnsp, bwsa[1][k], bwsa[0][k])
  print_meminfo("AFTER ANALYZE_HIT")

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/try_bwa_pairs.py   seal(Download)
def print_sams(gopt, bns, n_seq, bwsa):
  for i in range(n_seq):
    print bwa.analyze_hit(gopt, bns, bwsa[0][i], bwsa[1][i])
    print bwa.analyze_hit(gopt, bns, bwsa[1][i], bwsa[0][i])
 

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_seq_list_len.py   seal(Download)
 
    for k in xrange(l):
      v1 = bwa.analyze_hit(gopt[0], bnsp, bwsa[0][k], bwsa[1][k])
      v2 = bwa.analyze_hit(gopt[0], bnsp, bwsa[1][k], bwsa[0][k])
    size, resident = print_meminfo("AFTER ANALYZE_HIT")