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src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_core.py   seal(Download)
            [ "name2", "TTAGG", "beefy", "CTTGG", "caffe" ],
        ]
        self.toy_bwsa = bwa.build_bws_array(self.toy_data, qtype="fastq-illumina")
 
    def tearDown(self):
        # The first sequence should have a clipped length of 35 at q=15.
        # 35 is the minimum trimmed sequence length.
        bwsa = bwa.build_bws_array(pair, qtype="fastq-sanger", trim_qual=15)
        self.assertEqual(100, bwsa[0][0].full_len)
        self.assertEqual(35, bwsa[0][0].clip_len)
        )
        lengths = (42, 46)
        bwsa = bwa.build_bws_array(pair, qtype="fastq-sanger", trim_qual=15)
        self.assertEqual(lengths[0], bwsa[0][0].clip_len)
        self.assertEqual(lengths[1], bwsa[1][0].clip_len)
            ),
        )
        bwsa = bwa.build_bws_array(pair, qtype="fastq-sanger", trim_qual=0)
        self.assertEqual(100, bwsa[0][0].clip_len)
        self.assertEqual(100, bwsa[1][0].clip_len)
        )
        lengths = (85,100)
        bwsa = bwa.build_bws_array(pair, qtype="fastq-illumina", trim_qual=15)
        self.assertEqual(lengths[0], bwsa[0][0].clip_len)
        self.assertEqual(lengths[1], bwsa[1][0].clip_len)