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src/s/e/seal-0.4.0-rc2/seal/convert_bwa_index.py   seal(Download)
 
    print >>sys.stderr, "Converting indexed reference at %s.  This might take a while...." % index
    bwa.make_suffix_arrays_for_mmap(index)
    print >>sys.stderr, "done!"
    return 0

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_core.py   seal(Download)
    def test_make_mmap_sa(self):
        try:
            tu.build_ref_index()
            bwa.make_suffix_arrays_for_mmap(tu.reference)
 

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_bwa_aligner.py   seal(Download)
  def test_alignment_mmap(self):
    self.aligner.mmap_enabled = True
    # Generate the .sax and .rsax indices. They will be removed by tearDown.
    bwa.make_suffix_arrays_for_mmap(utils.reference)
    for row in self.pairs: