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All Samples(3)  |  Call(3)  |  Derive(0)  |  Import(0)

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_bwa_memory.py   seal(Download)
  cnt_chg = bwa.cal_pac_pos_pe(bwts, l, bwsa, ii, popt, gopt, last_ii)
  print_meminfo("AFTER CAL_PAC_POS_PE")
  bwa.paired_sw(bnsp, pacseq, l, bwsa, popt, ii)
  print_meminfo("AFTER PAIRED_SW")
  bwa.refine_gapped(bnsp, l, bwsa[0], pacseq)

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/try_bwa_pairs.py   seal(Download)
                                 ii, popt, gopt, last_ii)
    sys.stderr.write('ii: %r\n' %[ii.avg, ii.std, ii.low, ii.high])
    bwa.paired_sw(bns, pacseq, seq_pairs_read, bwsa, popt, ii)
    bwa.refine_gapped(bns, seq_pairs_read, bwsa[0], pacseq)
    bwa.refine_gapped(bns, seq_pairs_read, bwsa[1], pacseq)

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_seq_list_len.py   seal(Download)
      failed_ii += 1
 
    bwa.paired_sw(bnsp, pacseq, l, bwsa, popt, ii)
    size, resident = print_meminfo("AFTER PAIRED_SW")
    size_list.append(size)