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src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_bwa_memory.py   seal(Download)
  bwa.paired_sw(bnsp, pacseq, l, bwsa, popt, ii)
  print_meminfo("AFTER PAIRED_SW")
  bwa.refine_gapped(bnsp, l, bwsa[0], pacseq)
  bwa.refine_gapped(bnsp, l, bwsa[1], pacseq)
  print_meminfo("AFTER REFINE_GAPPED")

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/try_bwa_pairs.py   seal(Download)
    sys.stderr.write('ii: %r\n' %[ii.avg, ii.std, ii.low, ii.high])
    bwa.paired_sw(bns, pacseq, seq_pairs_read, bwsa, popt, ii)
    bwa.refine_gapped(bns, seq_pairs_read, bwsa[0], pacseq)
    bwa.refine_gapped(bns, seq_pairs_read, bwsa[1], pacseq)
    analyze_seqs(gopt[0], bns, seq_pairs_read, bwsa)

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_seq_list_len.py   seal(Download)
    resident_list.append(resident)
 
    bwa.refine_gapped(bnsp, l, bwsa[0], pacseq)
    bwa.refine_gapped(bnsp, l, bwsa[1], pacseq)
    size, resident = print_meminfo("AFTER REFINE_GAPPED")