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src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_bwa_memory.py   seal(Download)
  bwts = bwa.restore_index(refseq_fname)
  print_meminfo("AFTER RESTORING INDEX")
  bnsp, pacseq = bwa.restore_reference(refseq_fname)
  print_meminfo("AFTER RESTORING REFERENCE")
  gopt, popt = bwa.gap_init_opt(), bwa.pe_init_opt()
  bwts = bwa.restore_index(refseq_fname)
  print_meminfo("AFTER RESTORING INDEX")
  bnsp, pacseq = bwa.restore_reference(refseq_fname)
  print_meminfo("AFTER RESTORING REFERENCE")
  gopt, popt = bwa.gap_init_opt(), bwa.pe_init_opt()

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/test_seq_list_len.py   seal(Download)
    resident_list.append(resident)
 
    bnsp, pacseq = bwa.restore_reference(refseq_fname)
    size, resident = print_meminfo("AFTER RESTORING REFERENCE")
    size_list.append(size)

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/try_bwa_pairs.py   seal(Download)
  generate_ref(root_name)
  bwts = bwa.restore_index(root_name)
  bnsp, pacseq = bwa.restore_reference(root_name)
  sys.stderr.write(str(bnsp[0]))
  seq_reader = Bio.SeqIO.parse(open(hit_fn), 'fastq-illumina')

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/try_itermulti.py   seal(Download)
  pairs = list(it.islice(pairs_flow, 0, seq_list_len))
  bwts = bwa.restore_index(refseq_fname)
  bnsp, pacseq = bwa.restore_reference(refseq_fname)
 
  l = len(pairs)

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/try_bwa_iterator.py   seal(Download)
      break
    bwts = bwa.restore_index(refseq_fname)
    bnsp, pacseq = bwa.restore_reference(refseq_fname)
 
    l = len(pairs)

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/bwa/try_ann.py   seal(Download)
  sys.exit("USAGE: %s ROOT_REF_NAME (e.g., refseq.fa)")
 
bnsp, pacseq = bwa.restore_reference(ROOT)