Did I find the right examples for you? yes no

All Samples(2)  |  Call(2)  |  Derive(0)  |  Import(0)

src/s/e/seal-0.4.0-rc2/seal/lib/aligner/bwa/bwa_mapping.py   seal(Download)
  def get_base_qualities(self):
    if not hasattr(self, '__base_qualities'):
      if self.__read.qual:
        # BWA keeps base quality is in ASCII-33
        it = xrange(self.__read.full_len-1,-1,-1) if self.is_on_reverse() else xrange(self.__read.full_len)
  def get_seq_5(self):
    if not hasattr(self, "__seq5"):
      if self.is_on_reverse():
        # The sequence self.__read.get_rseq()[::-1] is shifted by one position.  The way to get
        # the correct reverse complement sequence is to build it from seq, which is exactly