Did I find the right examples for you? yes no

All Samples(9)  |  Call(6)  |  Derive(0)  |  Import(3)

src/s/e/seal-0.4.0-rc2/tests/seal/seqal/test_reducer.py   seal(Download)
 
 
from seal.lib.aligner.sam_mapping import SAMMapping
from seal.lib.mr.test_utils import reduce_context
from seal.seqal.reducer import reducer
        good_pair_sam = self.__ctx.emitted[key]
        for read in good_pair_sam:
            mapping = SAMMapping("\t".join( (key,read) ))
            self.assertFalse(mapping.is_duplicate())
 
        key = "HWI-ST200R_251:5:1208:19924:124635#GCCAAT"
        dup_pair_sam = self.__ctx.emitted[key]
        for read in dup_pair_sam:
            mapping = SAMMapping("\t".join( (key,read) ))
        good_pair_sam = self.__ctx.emitted[key]
        for read in good_pair_sam:
            mapping = SAMMapping("\t".join( (key,read) ))
            self.assertFalse(mapping.is_duplicate())
        key = "HWI-ST332_97:3:7:10556:138222#0"
        dup_pair_sam = self.__ctx.emitted[key]
        for read in dup_pair_sam:
            mapping = SAMMapping("\t".join( (key,read) ))

src/s/e/seal-0.4.0-rc2/tests/seal/seqal/test_mark_duplicates_emitter.py   seal(Download)
from seal.seqal.mapper import MarkDuplicatesEmitter
from seal.seqal.seqal_app import PAIR_STRING, UNMAPPED_STRING
from seal.lib.aligner.sam_mapping import SAMMapping
import test_utils # specific to seqal
 

src/s/e/seal-0.4.0-rc2/tests/seal/lib/aligner/test_sam_mapping.py   seal(Download)
import copy
 
from seal.lib.aligner.sam_mapping import SAMMapping
 
class TestSamMapping(unittest.TestCase):