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src/s/e/seal-0.4.0-rc2/tests/seal/seqal/test_mark_duplicates_emitter.py   seal(Download)
from seal.lib.mr.hit_processor_chain_link import HitProcessorChainLink
from seal.lib.mr.hadoop_event_monitor import HadoopEventMonitor
from seal.seqal.mapper import MarkDuplicatesEmitter
from seal.seqal.seqal_app import PAIR_STRING, UNMAPPED_STRING
from seal.lib.aligner.sam_mapping import SAMMapping
        self.logger = SavingLogger()
        self.monitor = HadoopEventMonitor(self.count_group, self.logger, self.ctx)
        self.link = MarkDuplicatesEmitter(self.ctx, self.monitor)
        self.pair1 = test_utils.pair1()
        self.pair2 = test_utils.pair2()

src/s/e/seal-0.4.0-rc2/tests/seal/seqal/test_utils.py   seal(Download)
def make_key(mapping):
    from seal.seqal.mapper import MarkDuplicatesEmitter
    # This function must be the same as MarkDuplicatesEmitter::get_hit_key
    return MarkDuplicatesEmitter.get_hit_key(mapping)