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src/c/m/cmonkey-python-HEAD/cmonkey/cmonkey_run.py   cmonkey-python(Download)
 
        stringfile = self['string_file']
        kegg_map = util.make_dfile_map(keggfile, 1, 3)
        ncbi_code = self['ncbi_code']
        nw_factories = []
        rsat_info = org.RsatSpeciesInfo(rsatdb, keggorg, self['rsat_organism'],
                                        self['ncbi_code'])
        gotax = util.make_dfile_map(gofile, 0, 1)[rsat_info.go_species()]
        synonyms = None
        if self['synonym_file'] is not None:

src/c/m/cmonkey-python-HEAD/test/testutil.py   cmonkey-python(Download)
            mo_db, max_operon_size=ratios.num_rows / 20, weight=0.5))
 
    keggorg = util.make_dfile_map(keggfile, 1, 3)['hal']
    rsat_info = org.RsatSpeciesInfo(rsatdb, keggorg, None, None)
    gotax = util.make_dfile_map(gofile, 0, 1)[rsat_info.go_species()]