# This code is part of the Biopython distribution and governed by its
# license.  Please see the LICENSE file that should have been included
# as part of this package.
#
 
from __future__ import print_function
 
from Bio.Seq import translate, transcribe, back_transcribe
import wx
 
ID_APPLY = 101
ID_CLEAR = 102
ID_EXIT = 103
ID_CLOSE = 104
ID_ABOUT = 105
ID_CODON = 106
ID_TRANSFORM = 107
 
 
class ParamsPanel(wx.Panel):
    def __init__(self, parent, log):
        wx.Panel.__init__(self, parent, -1)
        codon_table_static = wx.StaticText(self, -1, 'Codon Tables',
                                           style=wx.ALIGN_CENTER)
        lc = wx.LayoutConstraints()
        lc.top.SameAs(self, wx.Top, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.AsIs()
        lc.right.SameAs(self, wx.Right, 5)
        codon_table_static.SetConstraints(lc)
 
        codon_table_lb = wx.ListBox(self, ID_CODON)
        lc = wx.LayoutConstraints()
        lc.top.Below(codon_table_static, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.PercentOf(self, wx.Height, 30)
        lc.right.SameAs(self, wx.Right, 5)
        codon_table_lb.SetConstraints(lc)
        self.codon_table_lb = codon_table_lb
 
        codon_table_lb.Append('Standard')
        codon_table_lb.Append('Vertebrate Mitochondrial')
        codon_table_lb.Append('Yeast Mitochondrial')
        codon_table_lb.Append('Mold Mitochondrial')
        codon_table_lb.Append('Invertebrate Mitochondrial')
        codon_table_lb.Append('Echinoderm Mitochondrial')
        codon_table_lb.Append('Euplotid Nuclear')
        codon_table_lb.Append('Bacterial')
        codon_table_lb.Append('Alternative Yeast Nuclear')
        codon_table_lb.Append('Ascidian Mitochondrial')
        codon_table_lb.Append('Flatworm Mitochondrial')
        codon_table_lb.Append('Blepharisma Macronuclear')
        codon_table_lb.SetSelection(0)
 
        transform_static = wx.StaticText(self, -1, 'Transformation',
                                         style=wx.ALIGN_CENTER)
        lc = wx.LayoutConstraints()
        lc.top.Below(codon_table_lb, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.AsIs()
        lc.right.SameAs(self, wx.Right, 5)
        transform_static.SetConstraints(lc)
 
        transform_lb = wx.ListBox(self, ID_TRANSFORM)
        lc = wx.LayoutConstraints()
        lc.top.Below(transform_static, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.PercentOf(self, wx.Height, 30)
        lc.right.SameAs(self, wx.Right, 5)
        transform_lb.SetConstraints(lc)
 
        transform_lb.Append('Transcribe')
        transform_lb.Append('Translate')
        transform_lb.Append('Back transcribe')
        transform_lb.SetSelection(1)
        self.transform_lb = transform_lb
 
 
class SeqPanel(wx.Panel):
    def __init__(self, parent, log):
        self.parent = parent
        wx.Panel.__init__(self, parent, -1)
        apply_button = wx.Button(self, ID_APPLY, "Apply")
        clear_button = wx.Button(self, ID_CLEAR, "Clear")
        close_button = wx.Button(self, ID_CLOSE, "Close")
        wx.EVT_BUTTON(self, ID_CLOSE, self.OnClose)
        wx.EVT_BUTTON(self, ID_APPLY, self.OnApply)
        wx.EVT_BUTTON(self, ID_CLEAR, self.OnClear)
 
        lc = wx.LayoutConstraints()
        lc.bottom.SameAs(self, wx.Bottom, 10)
        lc.left.SameAs(self, wx.Left, 10)
        lc.height.AsIs()
        lc.width.PercentOf(self, wx.Width, 25)
        apply_button.SetConstraints(lc)
 
        lc = wx.LayoutConstraints()
        lc.bottom.SameAs(self, wx.Bottom, 10)
        lc.left.RightOf(apply_button, 5)
        lc.height.AsIs()
        lc.width.PercentOf(self, wx.Width, 25)
        clear_button.SetConstraints(lc)
 
        lc = wx.LayoutConstraints()
        lc.bottom.SameAs(self, wx.Bottom, 10)
        lc.left.RightOf(clear_button, 5)
        lc.height.AsIs()
        lc.width.PercentOf(self, wx.Width, 25)
        close_button.SetConstraints(lc)
 
        src_static = wx.StaticText(self, -1, 'Original Sequence',
                                   style=wx.ALIGN_CENTER)
        lc = wx.LayoutConstraints()
        lc.top.SameAs(self, wx.Top, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.AsIs()
        lc.right.SameAs(self, wx.Right, 5)
        src_static.SetConstraints(lc)
 
        src_text = wx.TextCtrl(self, -1, '', style=wx.TE_MULTILINE)
        lc = wx.LayoutConstraints()
        lc.top.Below(src_static, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.PercentOf(self, wx.Height, 30)
        lc.right.SameAs(self, wx.Right, 5)
        src_text.SetConstraints(lc)
        self.src_text = src_text
 
        dest_static = wx.StaticText(self, -1, 'Transformed Sequence',
                                    style=wx.ALIGN_CENTER)
        lc = wx.LayoutConstraints()
        lc.top.Below(src_text, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.AsIs()
        lc.right.SameAs(self, wx.Right, 5)
        dest_static.SetConstraints(lc)
 
        dest_text = wx.TextCtrl(self, -1, '', style=wx.TE_MULTILINE)
        lc = wx.LayoutConstraints()
        lc.top.Below(dest_static, 5)
        lc.left.SameAs(self, wx.Left, 5)
        lc.height.PercentOf(self, wx.Height, 30)
        lc.right.SameAs(self, wx.Right, 5)
        dest_text.SetConstraints(lc)
        self.dest_text = dest_text
 
    def OnClose(self, event):
        parent = self.GetParent()
        parent.Destroy()
 
    def OnApply(self, event):
        codon_table_lb = self.parent.params_panel.codon_table_lb
        selection = codon_table_lb.GetStringSelection()
        print(selection)
        codon_table = selection[:]
        transform_lb = self.parent.params_panel.transform_lb
        selection = transform_lb.GetStringSelection()
        transform = selection[:]
        print(transform)
        if(transform == 'Translate'):
            self.translate(codon_table)
        elif(transform == 'Transcribe'):
            self.transcribe()
        elif(transform == 'Back transcribe'):
            self.back_transcribe()
 
    def OnClear(self, event):
        self.src_text.Clear()
        self.dest_text.Clear()
 
    def translate(self, codon_table):
        seq = "".join(self.src_text.GetValue().split())  # remove whitespace
        print(seq)
        self.dest_text.Clear()
        self.dest_text.SetValue(translate(seq, table=codon_table,
                                          to_stop=True))
 
    def transcribe(self):
        seq = "".join(self.src_text.GetValue().split())  # remove whitespace
        print(seq)
        self.dest_text.Clear()
        self.dest_text.SetValue(transcribe(seq))
 
    def back_transcribe(self):
        seq = "".join(self.src_text.GetValue().split())  # remove whitespace
        print(seq)
        self.dest_text.Clear()
        self.dest_text.SetValue(back_transcribe(seq))
 
 
class SeqFrame(wx.Frame):
    def __init__(self, parent, ID, title):
        wx.Frame.__init__(self, parent, ID, title,
                          wx.DefaultPosition, wx.Size(500, 400))
        self.SetAutoLayout(True)
        self.CreateStatusBar()
        self.SetStatusText("This is the statusbar")
        menu = wx.Menu()
        menu.Append(ID_ABOUT, "&About",
                    "More information about this program")
        menu.AppendSeparator()
        menu.Append(ID_EXIT, "E&xit", "Terminate the program")
 
        menuBar = wx.MenuBar()
        menuBar.Append(menu, "&File")
        self.SetMenuBar(menuBar)
 
        params_panel = ParamsPanel(self, -1)
        lc = wx.LayoutConstraints()
        lc.top.SameAs(self, wx.Top, 10)
        lc.left.SameAs(self, wx.Left, 5)
        lc.bottom.SameAs(self, wx.Bottom, 5)
        lc.width.PercentOf(self, wx.Width, 40)
        params_panel.SetConstraints(lc)
 
        seq_panel = SeqPanel(self, -1)
        lc = wx.LayoutConstraints()
        lc.top.SameAs(self, wx.Top, 10)
        lc.left.RightOf(params_panel, 5)
        lc.bottom.SameAs(self, wx.Bottom, 5)
        lc.right.SameAs(self, wx.Right)
        seq_panel.SetConstraints(lc)
 
        self.seq_panel = seq_panel
        self.params_panel = params_panel
 
        wx.EVT_MENU(self, ID_EXIT, self.exit)
 
    def exit(self, event):
        self.Close(True)
 
 
class MyApp(wx.App):
    def OnInit(self):
        frame = SeqFrame(None, -1, "Greetings from Biopython")
        frame.Show(True)
        self.SetTopWindow(frame)
        return True
 
app = MyApp(0)
app.MainLoop()